SUSHI is a web application available at the Functional Genomics Center Zurich (FGCZ) for the analysis of Next Generation Sequencing (NGS) data. With its intuitive interface, it provides access to all major tools for NGS data analysis and lets the user generate comprehensive analysis workflows. SUSHI lets users analyze bulk and single-cell RNA-seq, ATAC-seq, ChIP-seq, methylation, and many other types of sequencing data. We will cover a specific topic of NGS data analysis once a month. You can see the preliminary schedule at ,
* https://fgcz-intranet.uzh.ch/tiki-index.php?page=SUSHI-go-round
* https://fgcz-intranet.uzh.ch/tiki-index.php?page=SUSHI-go-round
Titel
ID
Terminplanung
Medientyp
Medieninhaber
-
The introduction of the cell type identification for single-cell RNA-seq data in SUSHI
The 4th SUSHI seminar, Cell type identification…
11 Wiedergaben 0 -
The usage of the interactive ShinyApp in bulk-/sc-RNAseq analysis
The 3rd SUSHI seminar, Interactive ShinyApp in…
22 Wiedergaben 0 -
A typical scRNA-seq workflow (Cellranger + Seurat) in SUSHI
The 2nd SUSHI seminar, A typical scRNA-seq…
23 Wiedergaben 0 -
Cell type annotation of single-cell RNA-seq in SUSHI
The 4th SUSHI seminar, cell type annotation of…
23 Wiedergaben 0 -
An introduction to SUSHI in 2023
The 1st SUSHI seminar, An introduction to SUSHI,…
46 Wiedergaben 0 -
Interactive Shiny App in bulk RNAseq analysis
The 3rd SUSHI seminar, Interactive Shiny App in…
34 Wiedergaben 0 -
Bulk RNAseq analysis workflow in SUSHI
The 2nd SUSHI seminar, Bulk RNAseq analysis…
46 Wiedergaben 0 -
Slides: https://drive.switch.ch/index.php/s/qFYHbG9Hdv9TU1X
SUSHI seminar, Metagenomics, 17 Dec. 2022
10 Wiedergaben 0 -
Variant Calling in SUSHI Slides: https://drive.switch.ch/index.php/s/g0hdGQ5TQDTkq1J
SUSHI seminar, Variant Calling, 28 Oct. 2022
5 Wiedergaben 0 -
Tips for read mapping in SUSHISlides: https://drive.switch.ch/index.php/s/9n6aIA1k0nz2IGp
SUSHI seminar, Read mapping tips, 30 Sep. 2022
17 Wiedergaben 0 -
Introduction to the usage of Shiny application in SUSHI
SUSHI seminar, Interactive analysis in Shiny, 23…
5 Wiedergaben 0 -
Introduction to bulk RNAseq analysis on SUSHI, demonstrating how to analyze bulk RNAseq data on SUSHISlides: https://drive.switch.ch/index.php/s/0lNTpVF4YOD5wLw
SUSHI seminar, bulk RNAseq analysis, 17 May 2022
18 Wiedergaben 0 -
Introduction to SUSHI, demonstrating how to use it by showing a typical RNAseq analysis workflow. Slides: https://drive.switch.ch/index.php/s/0ByT4RGMusQ0z2t
SUSHI seminar, Introduction to SUSHI, 18 Mar. 2022
17 Wiedergaben 0
Suchen nach""