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The introduction of the cell type identification for single-cell RNA-seq data in SUSHI
Jahr und Semester (year and semester)
2024 Herbst (fall) Vortragende/r (Presenters)
Dr. Hubert Rehrauer Mitwirkende (contributors)
Masaomi Hatakeyama Standort (location)
Functional Genomics Center Zurich
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The usage of the interactive ShinyApp in bulk-/sc-RNAseq analysis
Lizenz (license)
All rights reserved Jahr und Semester (year and semester)
2024 Frühling (spring) Vortragende/r (Presenters)
Peter Leary Mitwirkende (contributors)
Masaomi Hatakeyama Standort (location)
Functional Genomics Center Zurich
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A typical
scRNA-seq
workflow (Cellranger
+ Seurat) in SUSHI
Lizenz (license)
All rights reserved Jahr und Semester (year and semester)
2024 Frühling (spring) Vortragende/r (Presenters)
Dr. Paul Gueguen Mitwirkende (contributors)
Masaomi Hatakeyama Standort (location)
Functional Genomics Center Zurich
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Cell type annotation of single-cell RNA-seq in SUSHI
Lizenz (license)
All rights reserved Jahr und Semester (year and semester)
2023 Herbst (fall) Vortragende/r (Presenters)
Hubert Rehrauer Mitwirkende (contributors)
Masaomi Hatakeyama Standort (location)
Functional Genomics Center Zurich
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An introduction to SUSHI in 2023
Lizenz (license)
All rights reserved Jahr und Semester (year and semester)
2023 Frühling (spring) Vortragende/r (Presenters)
Masaomi Hatakeyama Standort (location)
Functional Genomics Center Zurich
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Interactive Shiny App in bulk RNAseq analysis
Jahr und Semester (year and semester)
2023 Frühling (spring) Vortragende/r (Presenters)
Dr. Peter Leary Mitwirkende (contributors)
Dr. Masaomi Hatakeyama Standort (location)
Functional Genomics Center Zurich
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Bulk RNAseq analysis workflow in SUSHI
Lizenz (license)
All rights reserved Vorlesung/Event (Course/Event)
SUSHI Seminar Betreff (Subject)
SUSHI Seminar Jahr und Semester (year and semester)
2023 Frühling (spring) Vortragende/r (Presenters)
Dr. Adhideb Ghosh Mitwirkende (contributors)
Dr. Masaomi Hatakeyama Standort (location)
Functional Genomics Center Zurich
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Slides: https://drive.switch.ch/index.php/s/qFYHbG9Hdv9TU1X
Lizenz (license)
All rights reserved Vortragende/r (Presenters)
Dr. Natalia Zajac Mitwirkende (contributors)
Dr. Masaomi Hatakeyama Standort (location)
FGCZ
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Variant Calling in SUSHI Slides: https://drive.switch.ch/index.php/s/g0hdGQ5TQDTkq1J
Lizenz (license)
All rights reserved Vorlesung/Event (Course/Event)
SUSHI monthly seminar Vortragende/r (Presenters)
Dr. Lennart Opitz Mitwirkende (contributors)
Dr. Masaomi Hatakeyama
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Tips for read mapping in SUSHISlides: https://drive.switch.ch/index.php/s/9n6aIA1k0nz2IGp
Lizenz (license)
All rights reserved
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Introduction to bulk RNAseq analysis on SUSHI, demonstrating how to analyze bulk RNAseq data on SUSHISlides: https://drive.switch.ch/index.php/s/0lNTpVF4YOD5wLw
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Introduction to SUSHI, demonstrating how to use it by showing a typical RNAseq analysis workflow. Slides: https://drive.switch.ch/index.php/s/0ByT4RGMusQ0z2t
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